Analyzing Github Data with JupySQL + DuckDB#

JupySQL and DuckDB have many use cases. Here, let’s query the Github REST API to run some analysis using these tools.

%pip install jupysql duckdb duckdb-engine rich --quiet
Hide code cell output
Note: you may need to restart the kernel to use updated packages.

Pulling from Github API#

First, let’s pull information on repositories relating to ‘Jupyter’ from the Github API. Some operations may require a token, but accessing them is very simple if you have a Github account. More information on authentication can be found here. Our query will pull any repository relating to Jupyter, sorted by most to least stars.

import requests
import json
from pathlib import Path

res = requests.get(
    "https://api.github.com/search/repositories?q=jupyter&sort=stars&order=desc",
)

We then parse the information pulled from the API into a JSON format that we can run analysis on with JupySQL. We also need to save it locally as a .json file. Let’s make it easier by only dumping the ‘items’ array.

parsed = res.json()

_ = Path("jupyterdata.json").write_text(json.dumps(parsed["items"], indent=4))

Querying JSON File#

Let’s get some information on our first result. Load the extension and start a DuckDB in-memory database:

%load_ext sql
%sql duckdb://

Looking at our .json file, we have information on thousands of repositories. To start, let’s load information on our results.

%%sql
SELECT *
FROM read_json_auto('jupyterdata.json')
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*  duckdb://
Done.
id node_id name full_name private owner html_url description fork url forks_url keys_url collaborators_url teams_url hooks_url issue_events_url events_url assignees_url branches_url tags_url blobs_url git_tags_url git_refs_url trees_url statuses_url languages_url stargazers_url contributors_url subscribers_url subscription_url commits_url git_commits_url comments_url issue_comment_url contents_url compare_url merges_url archive_url downloads_url issues_url pulls_url milestones_url notifications_url labels_url releases_url deployments_url created_at updated_at pushed_at git_url ssh_url clone_url svn_url homepage size stargazers_count watchers_count language has_issues has_projects has_downloads has_wiki has_pages has_discussions forks_count mirror_url archived disabled open_issues_count license allow_forking is_template web_commit_signoff_required topics visibility forks open_issues watchers default_branch score
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37496521 MDEwOlJlcG9zaXRvcnkzNzQ5NjUyMQ== nteract nteract/nteract False {'login': 'nteract', 'id': 12401040, 'node_id': 'MDEyOk9yZ2FuaXphdGlvbjEyNDAxMDQw', 'avatar_url': 'https://avatars.githubusercontent.com/u/12401040?v=4', 'gravatar_id': '', 'url': 'https://api.github.com/users/nteract', 'html_url': 'https://github.com/nteract', 'followers_url': 'https://api.github.com/users/nteract/followers', 'following_url': 'https://api.github.com/users/nteract/following{/other_user}', 'gists_url': 'https://api.github.com/users/nteract/gists{/gist_id}', 'starred_url': 'https://api.github.com/users/nteract/starred{/owner}{/repo}', 'subscriptions_url': 'https://api.github.com/users/nteract/subscriptions', 'organizations_url': 'https://api.github.com/users/nteract/orgs', 'repos_url': 'https://api.github.com/users/nteract/repos', 'events_url': 'https://api.github.com/users/nteract/events{/privacy}', 'received_events_url': 'https://api.github.com/users/nteract/received_events', 'type': 'Organization', 'site_admin': False} https://github.com/nteract/nteract 📘 The interactive computing suite for you! ✨ False https://api.github.com/repos/nteract/nteract https://api.github.com/repos/nteract/nteract/forks https://api.github.com/repos/nteract/nteract/keys{/key_id} https://api.github.com/repos/nteract/nteract/collaborators{/collaborator} https://api.github.com/repos/nteract/nteract/teams https://api.github.com/repos/nteract/nteract/hooks https://api.github.com/repos/nteract/nteract/issues/events{/number} https://api.github.com/repos/nteract/nteract/events https://api.github.com/repos/nteract/nteract/assignees{/user} https://api.github.com/repos/nteract/nteract/branches{/branch} https://api.github.com/repos/nteract/nteract/tags https://api.github.com/repos/nteract/nteract/git/blobs{/sha} https://api.github.com/repos/nteract/nteract/git/tags{/sha} https://api.github.com/repos/nteract/nteract/git/refs{/sha} https://api.github.com/repos/nteract/nteract/git/trees{/sha} https://api.github.com/repos/nteract/nteract/statuses/{sha} https://api.github.com/repos/nteract/nteract/languages https://api.github.com/repos/nteract/nteract/stargazers https://api.github.com/repos/nteract/nteract/contributors https://api.github.com/repos/nteract/nteract/subscribers https://api.github.com/repos/nteract/nteract/subscription https://api.github.com/repos/nteract/nteract/commits{/sha} https://api.github.com/repos/nteract/nteract/git/commits{/sha} https://api.github.com/repos/nteract/nteract/comments{/number} https://api.github.com/repos/nteract/nteract/issues/comments{/number} https://api.github.com/repos/nteract/nteract/contents/{+path} https://api.github.com/repos/nteract/nteract/compare/{base}...{head} https://api.github.com/repos/nteract/nteract/merges https://api.github.com/repos/nteract/nteract/{archive_format}{/ref} https://api.github.com/repos/nteract/nteract/downloads https://api.github.com/repos/nteract/nteract/issues{/number} https://api.github.com/repos/nteract/nteract/pulls{/number} https://api.github.com/repos/nteract/nteract/milestones{/number} https://api.github.com/repos/nteract/nteract/notifications{?since,all,participating} https://api.github.com/repos/nteract/nteract/labels{/name} https://api.github.com/repos/nteract/nteract/releases{/id} https://api.github.com/repos/nteract/nteract/deployments 2015-06-15 23:21:49 2023-03-21 19:32:10 2023-03-02 22:08:32 git://github.com/nteract/nteract.git git@github.com:nteract/nteract.git https://github.com/nteract/nteract.git https://github.com/nteract/nteract https://nteract.io 41809 5984 5984 TypeScript True True True True False True 577 None False False 184 {'key': 'bsd-3-clause', 'name': 'BSD 3-Clause "New" or "Revised" License', 'spdx_id': 'BSD-3-Clause', 'url': 'https://api.github.com/licenses/bsd-3-clause', 'node_id': 'MDc6TGljZW5zZTU='} True False False ['data-science', 'desktop-application', 'ipython', 'jupyter', 'jupyter-notebook', 'monorepo', 'notebook', 'nteract', 'react', 'react-components', 'repl', 'zeromq'] public 577 184 5984 main 1.0
137444487 MDEwOlJlcG9zaXRvcnkxMzc0NDQ0ODc= jupytext mwouts/jupytext False {'login': 'mwouts', 'id': 29915202, 'node_id': 'MDQ6VXNlcjI5OTE1MjAy', 'avatar_url': 'https://avatars.githubusercontent.com/u/29915202?v=4', 'gravatar_id': '', 'url': 'https://api.github.com/users/mwouts', 'html_url': 'https://github.com/mwouts', 'followers_url': 'https://api.github.com/users/mwouts/followers', 'following_url': 'https://api.github.com/users/mwouts/following{/other_user}', 'gists_url': 'https://api.github.com/users/mwouts/gists{/gist_id}', 'starred_url': 'https://api.github.com/users/mwouts/starred{/owner}{/repo}', 'subscriptions_url': 'https://api.github.com/users/mwouts/subscriptions', 'organizations_url': 'https://api.github.com/users/mwouts/orgs', 'repos_url': 'https://api.github.com/users/mwouts/repos', 'events_url': 'https://api.github.com/users/mwouts/events{/privacy}', 'received_events_url': 'https://api.github.com/users/mwouts/received_events', 'type': 'User', 'site_admin': False} https://github.com/mwouts/jupytext Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts False https://api.github.com/repos/mwouts/jupytext https://api.github.com/repos/mwouts/jupytext/forks https://api.github.com/repos/mwouts/jupytext/keys{/key_id} https://api.github.com/repos/mwouts/jupytext/collaborators{/collaborator} https://api.github.com/repos/mwouts/jupytext/teams https://api.github.com/repos/mwouts/jupytext/hooks https://api.github.com/repos/mwouts/jupytext/issues/events{/number} https://api.github.com/repos/mwouts/jupytext/events https://api.github.com/repos/mwouts/jupytext/assignees{/user} https://api.github.com/repos/mwouts/jupytext/branches{/branch} https://api.github.com/repos/mwouts/jupytext/tags https://api.github.com/repos/mwouts/jupytext/git/blobs{/sha} https://api.github.com/repos/mwouts/jupytext/git/tags{/sha} https://api.github.com/repos/mwouts/jupytext/git/refs{/sha} https://api.github.com/repos/mwouts/jupytext/git/trees{/sha} https://api.github.com/repos/mwouts/jupytext/statuses/{sha} https://api.github.com/repos/mwouts/jupytext/languages https://api.github.com/repos/mwouts/jupytext/stargazers https://api.github.com/repos/mwouts/jupytext/contributors https://api.github.com/repos/mwouts/jupytext/subscribers https://api.github.com/repos/mwouts/jupytext/subscription https://api.github.com/repos/mwouts/jupytext/commits{/sha} https://api.github.com/repos/mwouts/jupytext/git/commits{/sha} https://api.github.com/repos/mwouts/jupytext/comments{/number} https://api.github.com/repos/mwouts/jupytext/issues/comments{/number} https://api.github.com/repos/mwouts/jupytext/contents/{+path} https://api.github.com/repos/mwouts/jupytext/compare/{base}...{head} https://api.github.com/repos/mwouts/jupytext/merges https://api.github.com/repos/mwouts/jupytext/{archive_format}{/ref} https://api.github.com/repos/mwouts/jupytext/downloads https://api.github.com/repos/mwouts/jupytext/issues{/number} https://api.github.com/repos/mwouts/jupytext/pulls{/number} https://api.github.com/repos/mwouts/jupytext/milestones{/number} https://api.github.com/repos/mwouts/jupytext/notifications{?since,all,participating} https://api.github.com/repos/mwouts/jupytext/labels{/name} https://api.github.com/repos/mwouts/jupytext/releases{/id} https://api.github.com/repos/mwouts/jupytext/deployments 2018-06-15 05:25:36 2023-03-23 10:23:10 2023-03-15 08:09:43 git://github.com/mwouts/jupytext.git git@github.com:mwouts/jupytext.git https://github.com/mwouts/jupytext.git https://github.com/mwouts/jupytext https://jupytext.readthedocs.io 24282 5879 5879 Python True True True True False False 380 None False False 96 {'key': 'mit', 'name': 'MIT License', 'spdx_id': 'MIT', 'url': 'https://api.github.com/licenses/mit', 'node_id': 'MDc6TGljZW5zZTEz'} True False False ['hydrogen', 'jupyter-notebook', 'jupyterlab', 'jupyterlab-extension', 'knitr', 'markdown', 'notebooks', 'python', 'rmarkdown', 'rstudio', 'version-control'] public 380 96 5879 main 1.0
99881209 MDEwOlJlcG9zaXRvcnk5OTg4MTIwOQ== machine-learning-mindmap dformoso/machine-learning-mindmap False {'login': 'dformoso', 'id': 2955131, 'node_id': 'MDQ6VXNlcjI5NTUxMzE=', 'avatar_url': 'https://avatars.githubusercontent.com/u/2955131?v=4', 'gravatar_id': '', 'url': 'https://api.github.com/users/dformoso', 'html_url': 'https://github.com/dformoso', 'followers_url': 'https://api.github.com/users/dformoso/followers', 'following_url': 'https://api.github.com/users/dformoso/following{/other_user}', 'gists_url': 'https://api.github.com/users/dformoso/gists{/gist_id}', 'starred_url': 'https://api.github.com/users/dformoso/starred{/owner}{/repo}', 'subscriptions_url': 'https://api.github.com/users/dformoso/subscriptions', 'organizations_url': 'https://api.github.com/users/dformoso/orgs', 'repos_url': 'https://api.github.com/users/dformoso/repos', 'events_url': 'https://api.github.com/users/dformoso/events{/privacy}', 'received_events_url': 'https://api.github.com/users/dformoso/received_events', 'type': 'User', 'site_admin': False} https://github.com/dformoso/machine-learning-mindmap A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning. False https://api.github.com/repos/dformoso/machine-learning-mindmap https://api.github.com/repos/dformoso/machine-learning-mindmap/forks https://api.github.com/repos/dformoso/machine-learning-mindmap/keys{/key_id} https://api.github.com/repos/dformoso/machine-learning-mindmap/collaborators{/collaborator} https://api.github.com/repos/dformoso/machine-learning-mindmap/teams https://api.github.com/repos/dformoso/machine-learning-mindmap/hooks https://api.github.com/repos/dformoso/machine-learning-mindmap/issues/events{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/events https://api.github.com/repos/dformoso/machine-learning-mindmap/assignees{/user} https://api.github.com/repos/dformoso/machine-learning-mindmap/branches{/branch} https://api.github.com/repos/dformoso/machine-learning-mindmap/tags https://api.github.com/repos/dformoso/machine-learning-mindmap/git/blobs{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/git/tags{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/git/refs{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/git/trees{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/statuses/{sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/languages https://api.github.com/repos/dformoso/machine-learning-mindmap/stargazers https://api.github.com/repos/dformoso/machine-learning-mindmap/contributors https://api.github.com/repos/dformoso/machine-learning-mindmap/subscribers https://api.github.com/repos/dformoso/machine-learning-mindmap/subscription https://api.github.com/repos/dformoso/machine-learning-mindmap/commits{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/git/commits{/sha} https://api.github.com/repos/dformoso/machine-learning-mindmap/comments{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/issues/comments{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/contents/{+path} https://api.github.com/repos/dformoso/machine-learning-mindmap/compare/{base}...{head} https://api.github.com/repos/dformoso/machine-learning-mindmap/merges https://api.github.com/repos/dformoso/machine-learning-mindmap/{archive_format}{/ref} https://api.github.com/repos/dformoso/machine-learning-mindmap/downloads https://api.github.com/repos/dformoso/machine-learning-mindmap/issues{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/pulls{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/milestones{/number} https://api.github.com/repos/dformoso/machine-learning-mindmap/notifications{?since,all,participating} https://api.github.com/repos/dformoso/machine-learning-mindmap/labels{/name} https://api.github.com/repos/dformoso/machine-learning-mindmap/releases{/id} https://api.github.com/repos/dformoso/machine-learning-mindmap/deployments 2017-08-10 04:29:24 2023-03-23 10:34:16 2020-05-30 07:34:20 git://github.com/dformoso/machine-learning-mindmap.git git@github.com:dformoso/machine-learning-mindmap.git https://github.com/dformoso/machine-learning-mindmap.git https://github.com/dformoso/machine-learning-mindmap None 15538 5752 5752 None True True True True False False 1000 None False False 4 {'key': 'apache-2.0', 'name': 'Apache License 2.0', 'spdx_id': 'Apache-2.0', 'url': 'https://api.github.com/licenses/apache-2.0', 'node_id': 'MDc6TGljZW5zZTI='} True False False ['cheatsheet', 'data', 'jupyter', 'learning', 'machine', 'machine-learning', 'mindmap', 'python', 'science'] public 1000 4 5752 master 1.0

However, this is a lot of information. After seeing what we’re working with, let’s pull the name of the repository, the author, the description, and the URL to make things cleaner. Let’s also limit our results to the top 5 starred repos.

%%sql
SELECT 
    name AS name,
    owner.login AS user,
    description AS description,
    html_url AS URL,
    stargazers_count AS stars
FROM read_json_auto('jupyterdata.json')
LIMIT 5
*  duckdb://
Done.
name user description URL stars
PythonDataScienceHandbook jakevdp Python Data Science Handbook: full text in Jupyter Notebooks https://github.com/jakevdp/PythonDataScienceHandbook 37861
handson-ml2 ageron A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2. https://github.com/ageron/handson-ml2 24399
tqdm tqdm A Fast, Extensible Progress Bar for Python and CLI https://github.com/tqdm/tqdm 24307
homemade-machine-learning trekhleb 🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained https://github.com/trekhleb/homemade-machine-learning 21071
dash plotly Data Apps & Dashboards for Python. No JavaScript Required. https://github.com/plotly/dash 18339

We can also load all of the pulled repositories that, say, have a certain range of stars:

%%sql
SELECT 
    name AS name,
    owner.login AS user,
    description AS description,
    html_url AS URL,
    stargazers_count AS stars
FROM read_json_auto('jupyterdata.json')
WHERE stargazers_count < 15000 AND stargazers_count > 10000 
*  duckdb://
Done.
name user description URL stars
jupyter jupyter Jupyter metapackage for installation, docs and chat https://github.com/jupyter/jupyter 14186
Screenshot-to-code emilwallner A neural network that transforms a design mock-up into a static website. https://github.com/emilwallner/Screenshot-to-code 13982
Kalman-and-Bayesian-Filters-in-Python rlabbe Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions. https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python 13439
jupyterlab jupyterlab JupyterLab computational environment. https://github.com/jupyterlab/jupyterlab 12741
kubeflow kubeflow Machine Learning Toolkit for Kubernetes https://github.com/kubeflow/kubeflow 12386
ds-cheatsheets FavioVazquez List of Data Science Cheatsheets to rule the world https://github.com/FavioVazquez/ds-cheatsheets 12026
dive-into-machine-learning dive-into-machine-learning Free ways to dive into machine learning with Python and Jupyter Notebook. Notebooks, courses, and other links. (First posted in 2016.) https://github.com/dive-into-machine-learning/dive-into-machine-learning 11126
PRML ctgk PRML algorithms implemented in Python https://github.com/ctgk/PRML 10928
ydata-profiling ydataai Create HTML profiling reports from pandas DataFrame objects https://github.com/ydataai/ydata-profiling 10384

And save it to a .csv file:

%%sql
COPY (
    SELECT
    name AS name,
    owner.login AS user,
    description AS description,
    html_url AS URL,
    stargazers_count AS stars
    FROM read_json_auto('jupyterdata.json')
    WHERE stargazers_count < 15000 AND stargazers_count > 10000 
)

TO 'jupyterdata.csv' (HEADER, DELIMITER ',');
*  duckdb://
Done.
Count
9
%%sql
SELECT * FROM 'jupyterdata.csv'
*  duckdb://
Done.
name user description URL stars
jupyter jupyter Jupyter metapackage for installation, docs and chat https://github.com/jupyter/jupyter 14186
Screenshot-to-code emilwallner A neural network that transforms a design mock-up into a static website. https://github.com/emilwallner/Screenshot-to-code 13982
Kalman-and-Bayesian-Filters-in-Python rlabbe Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions. https://github.com/rlabbe/Kalman-and-Bayesian-Filters-in-Python 13439
jupyterlab jupyterlab JupyterLab computational environment. https://github.com/jupyterlab/jupyterlab 12741
kubeflow kubeflow Machine Learning Toolkit for Kubernetes https://github.com/kubeflow/kubeflow 12386
ds-cheatsheets FavioVazquez List of Data Science Cheatsheets to rule the world https://github.com/FavioVazquez/ds-cheatsheets 12026
dive-into-machine-learning dive-into-machine-learning Free ways to dive into machine learning with Python and Jupyter Notebook. Notebooks, courses, and other links. (First posted in 2016.) https://github.com/dive-into-machine-learning/dive-into-machine-learning 11126
PRML ctgk PRML algorithms implemented in Python https://github.com/ctgk/PRML 10928
ydata-profiling ydataai Create HTML profiling reports from pandas DataFrame objects https://github.com/ydataai/ydata-profiling 10384

There’s no shortage of information that we can pull from this API, so this is just one example. Feel free to give it a try yourself— or explore using JupySQL with another API or .json file!